PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04710_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 141aa    MW: 14673.2 Da    PI: 8.0709
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.61.7e-122751125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+gCr+lL YP GA+sV+Ca+C +V
  GSMUA_Achr7P04710_001 27 CSGCRNLLLYPQGAKSVCCAVCRAV 51
                           ***********************98 PP

2zf-LSD145.61.1e-146690125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           CggC+tlL+Y rGA+sV+C++C+tV
  GSMUA_Achr7P04710_001 66 CGGCHTLLMYIRGASSVQCSCCHTV 90
                           ************************9 PP

3zf-LSD140.93.3e-13104128125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            Cg+C+ lL+Y +GA+sV+Ca+C++V
  GSMUA_Achr7P04710_001 104 CGNCQMLLMYQYGARSVKCAVCNFV 128
                            ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.6E-132454IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.98E-527125IPR011031Multihaem cytochrome
PfamPF069439.8E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.2E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-10101130IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPLAPPNG GQSQLVCSGC RNLLLYPQGA KSVCCAVCRA VTTVPPPGTE  60
MAQLICGGCH TLLMYIRGAS SVQCSCCHTV NLALEANQVA HVNCGNCQML LMYQYGARSV  120
KCAVCNFVTS IGASPSTEQK A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408106.12e-97PREDICTED: protein LSD1 isoform X1
RefseqXP_009408105.12e-97PREDICTED: protein LSD1 isoform X1
SwissprotQ0J7V97e-80LSD1_ORYSJ; Protein LSD1
TrEMBLM0TER12e-97M0TER1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04710_0015e-97(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-66lsd one like 1